Hello Arthur,

The tool "NGS: QC and manipulation -> FASTX-Toolkit -> Clip" will remove specified 3' adapter sequence.

Other "Trim" tools in the sections "NGS: QC and manipulation -> Generic FASTQ manipulation & FASTX-Toolkit" may be of interest, if you want to clip by length/quality.

Hopefully this provides you with some options,

Best,

Jen Galaxy team

On 2/20/12 7:32 AM, Hao Zheng wrote:

Hi,

Does galaxy provide primer/adaptor removal for NGS (illumina) reads?

Thanks.

Arthur

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