Hello Arthur,
The tool "NGS: QC and manipulation -> FASTX-Toolkit -> Clip" will remove specified 3' adapter sequence.
Other "Trim" tools in the sections "NGS: QC and manipulation -> Generic FASTQ manipulation & FASTX-Toolkit" may be of interest, if you want to clip by length/quality.
Hopefully this provides you with some options,
Best,
Jen Galaxy team
On 2/20/12 7:32 AM, Hao Zheng wrote:
Hi,
Does galaxy provide primer/adaptor removal for NGS (illumina) reads?
Thanks.
Arthur
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