combining two fastq files
Is there an option in galaxy to combine two fastq files? Thanks kanwar
This is my question, too! In my case, I just want to combine two fastq files into only one, for instance, one file come first and then comes the second. How can I make it? Thanks! Zhiqiang Quoting "Peter Cock" <p.j.a.cock@googlemail.com>:
On Tue, Nov 27, 2012 at 9:51 PM, shamsher jagat <kanwarjag@gmail.com> wrote:
Is there an option in galaxy to combine two fastq files? Thanks
kanwar
Yes, but what do you mean by combine? Interleave? Concatenate?
Peter ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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-------------------------- Zhiqiang Shu/Deng Lab Department of Biological Science Florida State University 319 Stadium Dr. Tallahassee, FL, USA, 32306-4295 zshu@bio.fsu.edu
Hi Zhiqiang, Here are the instructions, in case you didn't see the other post: http://lists.bx.psu.edu/pipermail/galaxy-user/2012-November/005576.html Thanks! Jen Galaxy team On 11/27/12 4:31 PM, Zhiqiang Shu wrote:
This is my question, too! In my case, I just want to combine two fastq files into only one, for instance, one file come first and then comes the second. How can I make it?
Thanks!
Zhiqiang
Quoting "Peter Cock" <p.j.a.cock@googlemail.com>:
On Tue, Nov 27, 2012 at 9:51 PM, shamsher jagat <kanwarjag@gmail.com> wrote:
Is there an option in galaxy to combine two fastq files? Thanks
kanwar
Yes, but what do you mean by combine? Interleave? Concatenate?
Peter ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-------------------------- Zhiqiang Shu/Deng Lab Department of Biological Science Florida State University 319 Stadium Dr. Tallahassee, FL, USA, 32306-4295 zshu@bio.fsu.edu
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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-- Jennifer Jackson http://galaxyproject.org
Hello Kanwar, If you just need to combine two datasets end to end, the tool "Text Manipulation -> Concatenate datasets tail-to-head" is a good choice. Please let us know if you had something else in mind, Jen Galaxy team On 11/27/12 1:51 PM, shamsher jagat wrote:
Is there an option in galaxy to combine two fastq files? Thanks
kanwar
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://galaxyproject.org
participants (4)
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Jennifer Jackson -
Peter Cock -
shamsher jagat -
Zhiqiang Shu