Hi there! I am teaching a workshop in East Africa, right this second, and we are trying to use a tool in galaxy (not too complex, files are not huge) to illustrate RNA-seq analysis. The server is SOOOOOOO slow-- is there a problem? Should we abandon ship and teach them Tophat using the command line? Please advise, at your earliest convenience-- I have a room full of impatient newbie hackers ;) Thank you! --Sarah **************************************** Sarah Schaack, PhD *Assistant Professor, Reed College* *Fulbright Scholar, Centre for Bioinformatics and Biotechnology, University of Nairobi**and Biosciences Eastern and Central Africa Hub, Int'l Livestock Research Institute* Email: schaackmobile@gmail.com Website: https://sites.google.com/site/schaackwork/ Phone (Kenya): +254 7 29 470 027 Workshop Info: https://sites.google.com/site/bioinfogenomicswrkshpea/
Hi Sarah, Using the public Main server for workshops is not recommended, however a Cloudman Galaxy is a great option. Amazon has a teaching grant program to help with funding that is very generous (Galaxy is free! grant is for cloud resources data/compute). For next time, here is the link to get started: http://usegalaxy.org/cloud Please let us know if we can help more when setting up, the galaxy-dev@bx.psu.edu list is good for cloud support questions, Best, Jen Galaxy team On 4/10/14 1:53 AM, Sarah Schaack wrote:
Hi there!
I am teaching a workshop in East Africa, right this second, and we are trying to use a tool in galaxy (not too complex, files are not huge) to illustrate RNA-seq analysis. The server is SOOOOOOO slow-- is there a problem? Should we abandon ship and teach them Tophat using the command line? Please advise, at your earliest convenience-- I have a room full of impatient newbie hackers ;)
Thank you! --Sarah
**************************************** Sarah Schaack, PhD /Assistant Professor, Reed College/ /Fulbright Scholar, Centre for Bioinformatics and Biotechnology, University of Nairobi //and Biosciences Eastern and Central Africa Hub, Int'l Livestock Research Institute/ Email: schaackmobile@gmail.com <mailto:schaackmobile@gmail.com> Website: https://sites.google.com/site/schaackwork/ Phone (Kenya): +254 7 29 470 027 Workshop Info: https://sites.google.com/site/bioinfogenomicswrkshpea// /
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participants (2)
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Jennifer Jackson -
Sarah Schaack