I have not checked this particular case now, but the difference between the different genomes are fairly small, especially for mouse and especially between these two versions. I have lifted thousands of regions between both and usually didn't get any unmappable regions. cheers Max On Wed, Dec 15, 2010 at 12:18 PM, pande <pande@uni-muenster.de> wrote:

Dear galaxy,

Conceptually if I take sequences from mm9 and use the lift over to convert them to mm8 and then annotate these with any software for cis element annotation do you think I will get a fairly good result ? I am bit confused. Does the annotation for the cis regulome undergo so much variation ?

thanks .

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