Suppose you have a list of SNP like this:
If you use Group tool (Join, Subtract, Group -> Group) with parameters
as shown in the attached figure you will get this:
1 ['A', 'B', 'C']
2 ['A', 'D']
It does print these brackets for the moment, but this will be fixed
once the Galaxy site in updated on Monday.
Let me know if this helps.
On Apr 16, 2009, at 6:56 PM, Elaine Angelino wrote:
i'm very new to galaxy and it looks very cool.
short version of my question: is there a way to take the transpose
of a tabular file?
i have a tab-delimited file of SNP data, where each row corresponds
to a SNP and each column corresponds to an individual (or other
attribute with per-SNP information, ex. chromosome or gene
for example, i would like to make a tab-delimited file where each
row corresponds to an individual and each column corresponds to a
SNP. then i would like to convert to hapmap format, etc.
thanks for any help!
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Department of Biochemistry and Molecular Biology
Center for Comparative Genomics and Bioinformatics
Penn State University