I have encountered this strange problem while submitting a job to an sge queue. I have
used the unified method wherein the galaxy setup is made available on NFS. I have mounted
the galaxy directory on the execution host.
As I submit a job through the web ui I could trace that the job does get submitted to the
queue. But however it fails with an error as below:
galaxy.jobs.runners.sge DEBUG 2009-04-14 08:36:09,252 (15/15) state change: job finished,
galaxy.jobs ERROR 2009-04-14 08:36:09,493 Unable to cleanup job 15 Traceback (most recent
File "/usr/galaxy/galaxy-6c555b0460f1/lib/galaxy/jobs/__init__.py", line 523,
in cleanup shutil.rmtree( self.working_directory )
File "/usr/local/lib/python2.5/shutil.py", line 167, in rmtree
onerror(os.listdir, path, sys.exc_info())
File "/usr/local/lib/python2.5/shutil.py", line 165, in rmtree names =
OSError: [Errno 2] No such file or directory:
Where could error be. Kindly let me know if anybody has faced error before.
Thanks a ton
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