We identified our local sequence file in tool-data/faseq.loc.
However, that file never shows up as an option under the "database/
(when we "pencil" edit a dataset). What additional configuration is
necessary to have our local files show up in the database/build
UCB Center for Integrative Genomics
On 24 Jun 2008, at 16:47, Rochak Neupane wrote:
> ---------- Forwarded message ----------
> From: Greg Von Kuster <ghv2(a)psu.edu>
> Date: Wed, Jun 18, 2008 at 1:06 PM
> Subject: Re: [galaxy-user] local sequence storage
> To: Rochak Neupane <rneupane(a)berkeley.edu>
> Cc: galaxy-user(a)bx.psu.edu
> Hello Rochak,
> Yes, this is certainly possible. The Galaxy distribution is
> configured to look in the ~/tool-data directory for files which point
> to your locally cached sequences. See the "tool_data_path"
> setting in
> the Galaxy config ( universe_wsgi.ini ). This directory contains
> sample ".loc.sample" files that are included in the distribution to
> provide information about how to point the ".loc" versions of the
> files to your own locally cached sequences. The comments at the
> beginning of each of these files provides this information.
> Greg Von Kuster
> Galaxy Development Team
> Rochak Neupane wrote:
>> I recently started using galaxy. I installed a local copy of
>> galaxy, and am wondering how I can add our own sequences so that
>> galaxy understands them when fetching. So instead of fetching
>> from PSU it'll look at a local source. Is this doable? If so,
>> how can I configure this?
>> galaxy-user mailing list