Map with Bowtie for Illumina (version 1.1.2)
Hi, is it possible to run Map with Bowtie for Illumina (version 1.1.2) in -v alignment mode/ If so, what settings do I need to enter? Many thanks, Marc. *** Professor Marc R. Knight, Director, Durham Centre for Crop Improvement Technology, School of Biological and Biomedical Sciences, Durham University, South Road, Durham DH1 3LE. Tel: +44 191 33 41224 Fax: +44 191 33 41201 Website: http://www.dur.ac.uk/dccit/ ***
Hi Marc, Yes, if you change "Bowtie settings to use" from common to full, you'll see the entire parameter list, including "Number of mismatches for SOAP-like alignment policy (-v):" -Dannon On Oct 27, 2011, at 8:40 AM, KNIGHT M.R. wrote:
Hi, is it possible to run Map with Bowtie for Illumina (version 1.1.2) in –v alignment mode/ If so, what settings do I need to enter? Many thanks, Marc.
*** Professor Marc R. Knight, Director, Durham Centre for Crop Improvement Technology, School of Biological and Biomedical Sciences, Durham University, South Road, Durham DH1 3LE. Tel: +44 191 33 41224 Fax: +44 191 33 41201 Website: http://www.dur.ac.uk/dccit/ ***
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Dannon Baker -
KNIGHT M.R.