Dear All
when I run Cuffmerge using the latest GenCode v19 GTF as a reference genome….this fails to run…tried this using multiple approaches and datasets.
Of note…...Cuffmerge works fine when the Gencode GTF is omitted as a reference genome. CuffCompare also works fine when the same Gencode GTF is used as a reference genome.
Presumably there is something wrong with the Cuffmerge set-up relating to the reference genome? Or am I doing something wrong.
Best wishes
Mark
galaxy-user@lists.galaxyproject.org