Hi Xiaogeng, Your genome can be loaded in .fasta format into a dataset and used as a custom reference genome. Annotation files can also be loaded as a dataset. Once loaded, both will then be available to use with tools, along with your loaded sequence data. Help with loading: http://wiki.galaxyproject.org/Support#Trouble_loading_data Help for Custom Genomes: http://wiki.galaxyproject.org/Support#Custom_reference_genome Best, Jen Galaxy team On 3/25/13 7:31 PM, xiaogeng Feng wrote:

Hi,

I am using Galaxy to analyze Chlamydia trachomatis F/SW4 illumina sequence. We could not find this genome in your dataset list. Is there a way to import Chlamydia trachomatis F/SW4 sequence to Galaxy? how about the annotation file?

Many thanks,

Xiaogeng

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