Loading Neurospora crassa genome database onto Galaxy.
Hi, I'm working on the filamentous fungi, Neurospora crassa and would like to use Galaxy to do some RNASeq analysis. Could you please load the Neurospora crassa genome into the reference data base on Galaxy. The sequences can be found at EnsemblFungi and at the Broad Intitute site. Could you please let me know which of the data set is used so that I can get the .gtf file. Thanks. Best regards, Julian Lai Junior Research Fellow Jedd Group Temasek Life Sciences Laboratory 1 Research Link National University of Singapore Singapore 117604 TLL is organizing an international conference on Next Generation Genomic View on Plants, Animals and Microbes on March 5th to 7th, 2014. For more information, please visit http://conference.tll.org.sg. Information in this email is confidential and may also be privileged. It is intended solely for the person to whom it is addressed. If you are not the intended recipient, please notify the sender, and please delete the message and any other record of it from your system immediately.
Hello Jedd, This would be a good case for using a Custom reference genome. Instructions are here: http://wiki.galaxyproject.org/Support#Custom_reference_genome Take care, Jen Galaxy team On 8/2/13 6:23 AM, Mr. Lai U Ming, Julian wrote:
Hi,
I'm working on the filamentous fungi, Neurospora crassa and would like to use Galaxy to do some RNASeq analysis. Could you please load the Neurospora crassa genome into the reference data base on Galaxy. The sequences can be found at EnsemblFungi and at the Broad Intitute site. Could you please let me know which of the data set is used so that I can get the .gtf file. Thanks.
Best regards,
Julian Lai Junior Research Fellow Jedd Group Temasek Life Sciences Laboratory 1 Research Link National University of Singapore Singapore 117604
TLL Conference <http://conference.tll.org.sg/>
TLL is organizing an international conference on Next Generation Genomic View on Plants, Animals and Microbes on March 5th to 7th, 2014. For more information, please visit http://conference.tll.org.sg <http://conference.tll.org.sg/> -------------------------------------------------------------------------------- Information in this email is confidential and may also be privileged. It is intended solely for the person to whom it is addressed. If you are not the intended recipient, please notify the sender, and please delete the message and any other record of it from your system immediately.
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participants (2)
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Jennifer Jackson -
Mr. Lai U Ming, Julian