hello users, 😊
My name is J.Braun and I am a new user of galaxy... It is a great tool for biologists. I have some questions and I would appreciate you could help me.
1) can I make a blast in Galaxy? 2) If so, can I download blast in galaxy? 3) If so, can I set up blast in my galaxy for analysis with only a particular species?
Thank you very much
Hi Jorge,
My name is J.Braun and I am a new user of galaxy... It is a great tool for biologists. I have some questions and I would appreciate you could help me.
- can I make a blast in Galaxy?
Yes!
- If so, can I download blast in galaxy?
Yes!
- If so, can I set up blast in my galaxy for analysis with only a
particular species?
Yes!
But you need a local Galaxy instance, or a Galaxy instance where you can convince the administrator to install the Blast Tools.
To install the Blast tools you can use the Tool Shed:
http://wiki.galaxyproject.org/Tool%20Shed
Here is the repository: http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus
You can put arbitrary blast databases into Galaxy (have a look at the location files - *.loc), you also can create your own databases with Galaxy and search against that.
Cheers, Bjoern
Thank you very much ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at:
Thanks Björn for the information and the links :)
I'm going to investigate galaxy and see if I can resolve the doubts.
Cheers,
Jorge
Subject: Re: [galaxy-user] Blast on Galaxy? From: bjoern.gruening@pharmazie.uni-freiburg.de To: braun_bio@hotmail.com CC: galaxy-user@lists.bx.psu.edu Date: Sun, 17 Nov 2013 21:16:55 +0100
Hi Jorge,
My name is J.Braun and I am a new user of galaxy... It is a great tool for biologists. I have some questions and I would appreciate you could help me.
- can I make a blast in Galaxy?
Yes!
- If so, can I download blast in galaxy?
Yes!
- If so, can I set up blast in my galaxy for analysis with only a
particular species?
Yes!
But you need a local Galaxy instance, or a Galaxy instance where you can convince the administrator to install the Blast Tools.
To install the Blast tools you can use the Tool Shed:
http://wiki.galaxyproject.org/Tool%20Shed
Here is the repository: http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus
You can put arbitrary blast databases into Galaxy (have a look at the location files - *.loc), you also can create your own databases with Galaxy and search against that.
Cheers, Bjoern
Thank you very much ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at:
galaxy-user@lists.galaxyproject.org
-
Björn Grüning -
Jorge Braun