Thanks Björn for the information and the links :)
I'm going to investigate galaxy and see if I can resolve the doubts.
Cheers,
Jorge
Subject: Re: [galaxy-user] Blast on Galaxy? From: bjoern.gruening@pharmazie.uni-freiburg.de To: braun_bio@hotmail.com CC: galaxy-user@lists.bx.psu.edu Date: Sun, 17 Nov 2013 21:16:55 +0100
Hi Jorge,
My name is J.Braun and I am a new user of galaxy... It is a great tool for biologists. I have some questions and I would appreciate you could help me.
- can I make a blast in Galaxy?
Yes!
- If so, can I download blast in galaxy?
Yes!
- If so, can I set up blast in my galaxy for analysis with only a
particular species?
Yes!
But you need a local Galaxy instance, or a Galaxy instance where you can convince the administrator to install the Blast Tools.
To install the Blast tools you can use the Tool Shed:
http://wiki.galaxyproject.org/Tool%20Shed
Here is the repository: http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus
You can put arbitrary blast databases into Galaxy (have a look at the location files - *.loc), you also can create your own databases with Galaxy and search against that.
Cheers, Bjoern
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