I try to download the human hg19 from igenomes in galaxy. I use 'shared data' > 'data libraries' > 'igenomes' > select hg19, but this persistently downloads the mm9 mouse genome not the human genome.
Any suggestions?
Paul Brady Afdeling CME-UZ, O&N I Herestraat 49 - bus 602, 3000 Leuven, Belgium. Tel: +32 16 345902 e-mail: Paul.Brady@med.kuleuven.be
Although there was a hg19 folder in the iGenomes data library, it was empty. This was probably causing your problem.
I've uploaded the iGenomes hg19 gene annotation to the iGenomes/hg19 folder and it should be accessible now.
Best, J.
On Sep 29, 2012, at 12:48 PM, Paul Brady wrote:
I try to download the human hg19 from igenomes in galaxy. I use 'shared data' > 'data libraries' > 'igenomes' > select hg19, but this persistently downloads the mm9 mouse genome not the human genome.
Any suggestions?
Paul Brady Afdeling CME-UZ, O&N I Herestraat 49 - bus 602, 3000 Leuven, Belgium. Tel: +32 16 345902 e-mail: Paul.Brady@med.kuleuven.be ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
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J, Thanks for doing this. Cheers D
Sent from my iPhone
On 1 Oct 2012, at 15:38, Jeremy Goecks jeremy.goecks@emory.edu wrote:
Although there was a hg19 folder in the iGenomes data library, it was empty. This was probably causing your problem.
I've uploaded the iGenomes hg19 gene annotation to the iGenomes/hg19 folder and it should be accessible now.
Best, J.
On Sep 29, 2012, at 12:48 PM, Paul Brady wrote:
I try to download the human hg19 from igenomes in galaxy. I use 'shared data' > 'data libraries' > 'igenomes' > select hg19, but this persistently downloads the mm9 mouse genome not the human genome.
Any suggestions?
Paul Brady Afdeling CME-UZ, O&N I Herestraat 49 - bus 602, 3000 Leuven, Belgium. Tel: +32 16 345902 e-mail: Paul.Brady@med.kuleuven.be ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
galaxy-user@lists.galaxyproject.org
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Jeremy Goecks -
Paul Brady