removing repeated entries from chip regions
Hi, Can galaxy help in removing the entries like this and convert these into one region like 149116122-149116142: chr1 149116122 149116141 region_27 0 + chr1 149116123 149116142 region_28 0 + chr1 149116124 149116141 region_29 0 + chr1 149116125 149116142 region_30 0 + chr1 149116126 149116142 region_31 0 + chr1 149116127 149116142 region_32 0 + thanks.
Have you tried "Merge" from the "Operate on Genomic Intervals" tools? Regards, Hans On 08/26/2010 11:56 AM, pande wrote:
Hi, Can galaxy help in removing the entries like this and convert these into one region like 149116122-149116142:
chr1 149116122 149116141 region_27 0 + chr1 149116123 149116142 region_28 0 + chr1 149116124 149116141 region_29 0 + chr1 149116125 149116142 region_30 0 + chr1 149116126 149116142 region_31 0 + chr1 149116127 149116142 region_32 0 +
thanks. _______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user
Pande: Take a look at "Operate on Genomics Intervals -> Merge" tool (see attached image). anton galaxy team On Aug 26, 2010, at 5:56 AM, pande wrote:
Hi, Can galaxy help in removing the entries like this and convert these into one region like 149116122-149116142:
chr1 149116122 149116141 region_27 0 + chr1 149116123 149116142 region_28 0 + chr1 149116124 149116141 region_29 0 + chr1 149116125 149116142 region_30 0 + chr1 149116126 149116142 region_31 0 + chr1 149116127 149116142 region_32 0 +
thanks. _______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user
Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org
participants (3)
-
Anton Nekrutenko -
Hans-Rudolf Hotz -
pande