Hi, Can galaxy help in removing the entries like this and convert these into one region like 149116122-149116142:
chr1 149116122 149116141 region_27 0 + chr1 149116123 149116142 region_28 0 + chr1 149116124 149116141 region_29 0 + chr1 149116125 149116142 region_30 0 + chr1 149116126 149116142 region_31 0 + chr1 149116127 149116142 region_32 0 +
thanks.
Have you tried "Merge" from the "Operate on Genomic Intervals" tools?
Regards, Hans
On 08/26/2010 11:56 AM, pande wrote:
Hi, Can galaxy help in removing the entries like this and convert these into one region like 149116122-149116142:
chr1 149116122 149116141 region_27 0 + chr1 149116123 149116142 region_28 0 + chr1 149116124 149116141 region_29 0 + chr1 149116125 149116142 region_30 0 + chr1 149116126 149116142 region_31 0 + chr1 149116127 149116142 region_32 0 +
thanks. _______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user
Pande:
Take a look at "Operate on Genomics Intervals -> Merge" tool (see attached image).
anton galaxy team
On Aug 26, 2010, at 5:56 AM, pande wrote:
Hi, Can galaxy help in removing the entries like this and convert these into one region like 149116122-149116142:
chr1 149116122 149116141 region_27 0 + chr1 149116123 149116142 region_28 0 + chr1 149116124 149116141 region_29 0 + chr1 149116125 149116142 region_30 0 + chr1 149116126 149116142 region_31 0 + chr1 149116127 149116142 region_32 0 +
thanks. _______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user
Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org
galaxy-user@lists.galaxyproject.org
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Anton Nekrutenko -
Hans-Rudolf Hotz -
pande