Read group info isn't included in the Cuffdiff output right now. I've created a Trello card to fix this oversight: https://trello.com/c/FdUYdbIn Best, J. On Feb 18, 2013, at 12:32 PM, Johanna Sandgren wrote:

Hi,

I am running cufflinks and cuffdiff using Galaxy. I am however wondering if it is not supposed to be output files from cuffdiff regarding each replicate. Anyone know why those (read.group-files) are not there, or when they will be if it is because of the version used in Galaxy. I find it very valuable to have those to be able to see intra/inter-group features in downstream analysis.

Thanks, Johanna

...................................................................................................................................................... Johanna Sandgren, PhD Department of Oncology-Pathology CCK, Karolinska Institutet SE-171 76 Stockholm, Sweden +46-8-517 721 35 (office), +46-8- 321047(fax), +46-708 388476 (mobile)

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