estimating galaxy on the cloud needs for RNAseq
Questions: I have been running sets of data for cufflinks/cuffdiff analysis on Galaxy online--I am considering using the cloud but from what I can read, because of different person's galaxy needs, I can't get an clear idea of what I would need and how long it would take to process (and the cost) if I am running weekly 4 x 16gb fastq files to 6-8 x 16gb files--one set per week Is anyone out there using the cloud exclusively for this type of analysis? And can you give me an idea of what type of cloud setup I could use? I have no idea of how much time it would take to process these on the cloud so its hard to estimate setup costs and specific requirements. Elwood Linney
Hi Elwood, The actual costs can vary depending on the actual data content, genomes, and parameters, but our wiki has resources for planning around resources and costs. Then after the first few runs on the right configuration, you'll have the best numbers to estimate ongoing costs. Here are the best links (most of this information has been very recently updated!): http://usegalaxy.org/cloud http://wiki.galaxyproject.org/CloudMan/CapacityPlanning http://wiki.galaxyproject.org/CloudMan/AWS/CapacityPlanning http://wiki.galaxyproject.org/CloudMan/CustomizeGalaxyCloud http://aws.amazon.com/ec2/#pricing Hopefully this helps, Jen Galaxy team On 9/15/13 6:22 AM, Elwood Linney wrote:
Questions:
I have been running sets of data for cufflinks/cuffdiff analysis on Galaxy online--I am considering using the cloud but from what I can read, because of different person's galaxy needs, I can't get an clear idea of what I would need and how long it would take to process (and the cost) if I am running weekly
4 x 16gb fastq files to 6-8 x 16gb files--one set per week
Is anyone out there using the cloud exclusively for this type of analysis? And can you give me an idea of what type of cloud setup I could use? I have no idea of how much time it would take to process these on the cloud so its hard to estimate setup costs and specific requirements.
Elwood Linney
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at:
-- Jennifer Hillman-Jackson http://galaxyproject.org
participants (2)
-
Elwood Linney
-
Jennifer Jackson