Yes, BAM files are sorted and indexed when they are uploaded. Just load
the .bam, not the .bam.bai when using FTP.
Sorry for the delayed reply!
On 8/25/13 3:14 AM, lilach noy wrote:
Does anyone know if in order to use Slice bam I need to sort the bam
file first or does galaxy automatically sort any bam file uploaded?
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