Query on UCSC Genome Browser software
Respected Sir / Ma'am,
I want to bring forth a humble request. I am a Undergraduate student at Indian Institute of Technology , Kanpur , India; majoring in Biological Sciences & Bio-Engineering. During the process of using Galaxy bio - tools I was stuck up how to proceed in a systematic fashion so as to get an adequate solution. I have a database of queries in the following format.
A NM_001100917 0-74,1-167,2-240,3-365,4-440,5-551,6-695,7-779,8-1020, C AAACAATCTCGATTCTAAATTGAAACGAACGCAGCATTTCAGGGACTGGATGAGGAG 1.4 TCATTAATGGAGCTTTCTTG-GGTTCAGCAACTATGGCATG 1.5 TCATTAATGGAGCTTTCTTG-ATTACAGTGTTGTGGCCAAC 1.6 TCATTAATGGAGCTTTCTTG-GGGTTGTGAAAATAAAATCA 1.7 TCATTAATGGAGCTTTCTTG-GGTTTTCCAAGTCTCATTAA 2.3 TAATTTTTTAACAGCTTTTG-GTATGCAGTATTGATAACAT 2.4 TAATTTTTTAACAGCTTTTG-GGTTCAGCAACTATGGCATG 2.5 TAATTTTTTAACAGCTTTTG-ATTACAGTGTTGTGGCCAAC 2.6 TAATTTTTTAACAGCTTTTG-GGGTTGTGAAAATAAAATCA 2.7 TAATTTTTTAACAGCTTTTG-GGTTTTCCAAGTCTCATTAA 3.4 TCAGATGGCTCCTAATTGTG-GGTTCAGCAACTATGGCATG
Now I wanted them in Fasta format in the following fashion:
NM_001100917_1.4 TCATTAATGGAGCTTTCTTG-GGTTCAGCAACTATGGCATG NM_001100917_1.5 TCATTAATGGAGCTTTCTTG-ATTACAGTGTTGTGGCCAAC NM_001100917_1.6 TCATTAATGGAGCTTTCTTG-GGGTTGTGAAAATAAAATCA
so on.. Therefore I humbly wanted to inquire how to get to such format through the use of galaxy bio-tools. I would be waiting for your reply.
Thanking you Your's Sincerely Anoop Katiyar akatiyar@iitk.ac.in 4th year UnderGraduate Dept. of B.S.B.E. IIT Kanpur ,India.
"Throughout the centuries there were men who took first steps, down new roads, armed with nothing but their own vision."
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akatiyar@iitk.ac.in