Hi,
I'm getting the following error when trying to run galaxy over our cluster (using the unified method): Exception: SGEJobRunner requires DRMAA_python which was not found
I've got what I think is the right package from here: http://gridengine.sunsource.net/howto/drmaa_python.html
But I'm getting a bit out of my depth here and it's asking about 'swig'. Can I just check that I'm not doing anything stupid and that I can run this DRMAA_python in user-space rather than globally while I get to grips with the set-up?
Cheers,
Chris.
On Tue, Oct 14, 2008 at 12:03 PM, Chris Cole chris@compbio.dundee.ac.uk wrote:
Hi,
I'm getting the following error when trying to run galaxy over our cluster (using the unified method): Exception: SGEJobRunner requires DRMAA_python which was not found
I've got what I think is the right package from here: http://gridengine.sunsource.net/howto/drmaa_python.html
But I'm getting a bit out of my depth here and it's asking about 'swig'. Can I just check that I'm not doing anything stupid and that I can run this DRMAA_python in user-space rather than globally while I get to grips with the set-up?
Did you install the python DRMAA package? It is not a "script" but a set of libraries that allow python programs to interact with SGE.
Sean
Chris Cole wrote:
I'm getting the following error when trying to run galaxy over our cluster (using the unified method): Exception: SGEJobRunner requires DRMAA_python which was not found
I've got what I think is the right package from here: http://gridengine.sunsource.net/howto/drmaa_python.html
But I'm getting a bit out of my depth here and it's asking about 'swig'. Can I just check that I'm not doing anything stupid and that I can run this DRMAA_python in user-space rather than globally while I get to grips with the set-up?
Hi Chris,
You should be able to "scramble" DRMAA_python by setting SGE_ROOT and using our provided script:
SGE_ROOT=/path/to/sge python scripts/scramble.py DRMAA_python
Please let me know if this works for you.
--nate
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