request for a new genome (Aedes aegypti)
Dear Galaxy team, I would like you to add in the insect genomes available in Galaxy the genome of Aedes aegypti which is available in Vectorbase (http://aaegypti.vectorbase.org/), Thank you, Laurence Després -- Laurence Després Laurence Després Equipe Bases Génétiques de l'adaptation (GBA) Laboratoire d'Ecologie Alpine (LECA) UMR CNRS 5553 Université J. Fourier Domaine universitaire de Saint Martin d'Hères 2233, rue de la piscine Bât. D BiologieBP 53, 38041 Grenoble Cedex 9, France laurence.despres@ujf-grenoble.fr <mailto:laurence.despres@ujf-grenoble.fr> Tel: 33 (0)4 76 63 56 99 Fax: 33 (0)4 76 51 42 79 http://www2.ujf-grenoble.fr/leca/ Master2R Biodiversité-Ecologie-Environnement (BEE) http://www-biologie.ujf-grenoble.fr/SiteBio/ <http://www-biologie.ujf-grenoble.fr/SiteBio/articles.php?lng=fr&pg=280>
Hello Laurence, The genome "Mosquito (Aedes aegypti) (AaegL1)" is already included in Galaxy as a native genome. To location the genome, type part of the name, I used parts of both the common name "mos" and the scientific name "aeg" and found the genome on the "Edit attributes" page (pencil icon) and on tool forms (Bowtie, BWA, TopHat). "AaegL1" is the latest "genome build". There are more recent "gene builds", but these refer to annotation, not reference sequence. If you wish to use the most current "gene build annotation" information, this appears to be available through Biomart, which means that the Galaxy "Get Data -> Biomart" tool can be used to import the datasets directly for use with tools. Hopefully this helps, Jen Galaxy team On 7/2/12 7:53 AM, Laurence Després wrote:
Dear Galaxy team,
I would like you to add in the insect genomes available in Galaxy the genome of Aedes aegypti which is available in Vectorbase (http://aaegypti.vectorbase.org/), Thank you, Laurence Després -- Laurence Després
Laurence Després Equipe Bases Génétiques de l'adaptation (GBA) Laboratoire d'Ecologie Alpine (LECA) UMR CNRS 5553 Université J. Fourier Domaine universitaire de Saint Martin d'Hères 2233, rue de la piscine Bât. D BiologieBP 53, 38041 Grenoble Cedex 9, France laurence.despres@ujf-grenoble.fr <mailto:laurence.despres@ujf-grenoble.fr> Tel: 33 (0)4 76 63 56 99 Fax: 33 (0)4 76 51 42 79 http://www2.ujf-grenoble.fr/leca/ Master2R Biodiversité-Ecologie-Environnement (BEE) http://www-biologie.ujf-grenoble.fr/SiteBio/ <http://www-biologie.ujf-grenoble.fr/SiteBio/articles.php?lng=fr&pg=280>
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://galaxyproject.org
participants (2)
-
Jennifer Jackson
-
Laurence Després