Hi Rodolfo, Using Rpy to interface Galaxy and R was not a good idea in my experience, when Rpy was used Galaxy seams to not be able to handle the interruption of a file being loaded (e.g network failure or refresh action in the browser) we solved the problem by using Popen instead. Regards, Jorge On Mon, May 10, 2010 at 10:55 PM, Kanwei Li <kanwei@gmail.com> wrote:

Hi Rodolfo,

You are probably not using the macports python to run galaxy... please check by entering "which python" in console.

Thanks,

Kanwei

On Mon, May 10, 2010 at 3:59 AM, Rodolfo Aramayo <raramayo@tamu.edu> wrote:

...

People,

I have installed Galaxy on my laptop following standard procedures I have installed R, NumPy and RPy via MacPorts yet Galaxy seems to complain it cannot connect to them == An error occurred running this job: Traceback (most recent call last): File "/Library/WebServer/Documents/galaxy_dist/tools/stats/gsummary.py", line 4, in <module> from rpy import * ImportError: No module named rpy == Any ideas/suggestions would be greatly appreciated

Thanks

Rodolfo Aramayo _______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user

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