Fwd: Fwd: Galaxy2.2 Test retrieving DNA sequences
Hi- thanks for all of the suggestions- so far we've had no luck in obtaining our sequences. One thing I remember is that different browsers have different settings for how long they take until they time-out- maybe we should try something other than Safari? Laura Begin forwarded message:
From: "Yang, Mary \(NIH/NHGRI\) [F]" <yangma@mail.nih.gov> Date: July 28, 2006 2:45:22 PM EDT To: "Elnitski, Laura \(NIH/NHGRI\) [E]" <elnitski@mail.nih.gov> Subject: Re: [Galaxy-user] Fwd: Galaxy2.2 Test retrieving DNA sequences
Laura: Ben and I tried the suggested options, none of them work. Also Ben tried the other ways, like curl, did not work either.
Mary
On Jul 28, 2006, at 4:10 PM, Laura Elnitski wrote:
thanks for all of the suggestions- so far we've had no luck in obtaining our sequences. One thing I remember is that different browsers have different settings for how long they take until they time-out- maybe we should try something other than Safari?
Laura, Since other tools such as curl are failing, it may be more than just a browser timeout. Could you possibly provide the full output that you receive when trying to download using tools like curl or wget? --nate
Hi Nate- Thanks for your help. Also, we should note that this seems to work if we try chromosome by chromosome. here's the output from from wget: Begin forwarded message: From: "Yang, Mary \(NIH/NHGRI\) [F]" <yangma@mail.nih.gov> Date: July 28, 2006 4:31:09 PM EDT To: "Elnitski, Laura \(NIH/NHGRI\) [E]" <elnitski@mail.nih.gov> Subject: Re: [Galaxy-user] Fwd: Fwd: Galaxy2.2 Test retrieving DNA sequences yes, I did. Here is the information I got: wget http://test.g2.bx.psu.edu/display?id=24857 --13:27:59-- http://test.g2.bx.psu.edu/display?id=24857 => `display?id=24857' Resolving test.g2.bx.psu.edu... 128.118.201.89 Connecting to test.g2.bx.psu.edu|128.118.201.89|:80... connected. HTTP request sent, awaiting response... 503 Service Unavailable 13:33:59 ERROR 503: Service Unavailable. Mary On Jul 31, 2006, at 12:20 PM, Nate Coraor wrote:
On Jul 28, 2006, at 4:10 PM, Laura Elnitski wrote:
thanks for all of the suggestions- so far we've had no luck in obtaining our sequences. One thing I remember is that different browsers have different settings for how long they take until they time-out- maybe we should try something other than Safari?
Laura,
Since other tools such as curl are failing, it may be more than just a browser timeout. Could you possibly provide the full output that you receive when trying to download using tools like curl or wget?
--nate
participants (2)
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Laura Elnitski -
Nate Coraor