Re: [galaxy-user] galaxy-user Digest, Vol 89, Issue 4
Dear Graham, Thanks for the info. However, my problem is that the "Tool Version" field is completely empty in my history items (eg. Tophat2, Cuffdiff). I suppose I can check the dependancies list you described, but it would be important to know precisely which version was run on any given query. Best regards, Cory Message: 3
Date: Tue, 5 Nov 2013 09:45:19 +0000 From: "graham etherington (TSL)" <graham.etherington@sainsbury-laboratory.ac.uk> To: Cory Dunn <cdunn@ku.edu.tr>, "galaxy-user@bx.psu.edu" <galaxy-user@bx.psu.edu> Subject: Re: [galaxy-user] Cuffdiff version not apparent Message-ID: <CE9E6D0A.21768%graham.etherington@sainsbury-laboratory.ac.uk> Content-Type: text/plain; charset="Windows-1252"
Hi Cory, A list of Galaxy dependancies can be found on the wiki at: http://wiki.galaxyproject.org/Admin/Tools/Tool%20Dependencies ...although many tools allow a range of tool versions.
You can also identify the information about the specific tool versions by clicking on the View Details ?i? icon of a history item created by that tool and looking at the Tool Version field. If you?re using the Galaxy public server (https://usegalaxy.org/) then clicking on the ?i? icon of a cuffdiff output file will show:
Tool Version:cuffdiff v2.1.1 (4046M) Hope this helps.
Cheers, Graham
Thanks for the info. However, my problem is that the "Tool Version" field is completely empty in my history items (eg. Tophat2, Cuffdiff). I suppose I can check the dependancies list you described, but it would be important to know precisely which version was run on any given query.
If you ran Cuffdiff in the last couple months, you used version 2.1.1 ; before that it was 1.3.x The version information was added in the last couple weeks, which is why you don't see it. Any runs going forward should include the version. J.
Best regards, Cory
Message: 3 Date: Tue, 5 Nov 2013 09:45:19 +0000 From: "graham etherington (TSL)" <graham.etherington@sainsbury-laboratory.ac.uk> To: Cory Dunn <cdunn@ku.edu.tr>, "galaxy-user@bx.psu.edu" <galaxy-user@bx.psu.edu> Subject: Re: [galaxy-user] Cuffdiff version not apparent Message-ID: <CE9E6D0A.21768%graham.etherington@sainsbury-laboratory.ac.uk> Content-Type: text/plain; charset="Windows-1252"
Hi Cory, A list of Galaxy dependancies can be found on the wiki at: http://wiki.galaxyproject.org/Admin/Tools/Tool%20Dependencies ...although many tools allow a range of tool versions.
You can also identify the information about the specific tool versions by clicking on the View Details ?i? icon of a history item created by that tool and looking at the Tool Version field. If you?re using the Galaxy public server (https://usegalaxy.org/) then clicking on the ?i? icon of a cuffdiff output file will show:
Tool Version:cuffdiff v2.1.1 (4046M) Hope this helps.
Cheers, Graham
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at:
participants (2)
-
Cory Dunn -
Jeremy Goecks