Hello Jiwen, For the FTP operation, please see the instructions in this wiki and screencast. There are no known issues, so double checking the steps is a good place to start with troubleshooting the process: http://wiki.g2.bx.psu.edu/Learn/Upload%20via%20FTP For Biomart, certain fields have HTML content. Galaxy does not permit these to be transferred. The solution is to uncheck these boxes in the Biomart form (where the fields of the output file are selected) and send over the remaining data. It can take some experimentation to locate the exact fields with the HTML content sometimes, but these tend to be the description text fields, so I would start with omitting those first and see if the problem clears up. Best, Jen Galaxy team On 2/1/12 2:34 AM, 杨继文 wrote:

Hi All, Today I have problem to use FTP to upload data to Galaxy. I used Filezilla software and the server name "main.g2.bx.psu.edu", but I can not connect to the server. Something wrong with my operation? Also, when I tried to get data from Biomart to Galaxy, I got the error warning "the uploaded file contains unappropriate HTML links " Hope you can tell me if I did something wrong. Thanks Jiwen

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