Hi Lilach,
Yes, BAM files are sorted and indexed when they are uploaded. Just load the .bam, not the .bam.bai when using FTP.
Sorry for the delayed reply!
Jen Galaxy team
On 8/25/13 3:14 AM, lilach noy wrote:
hello all,
Does anyone know if in order to use Slice bam I need to sort the bam file first or does galaxy automatically sort any bam file uploaded?
Many thanks, Lilach Noy
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