It's worth noting that command line parameters are sanitized for security purposes, so passing them unsanitized should only be done in controlled environments where security is not a concern. Otherwise, parameters should be restored to their original values by the tool or a wrapper around the tool. --nate On Oct 5, 2010, at 10:10, Jelle Scholtalbers <j.scholtalbers@gmail.com> wrote:

Hi,

take a look at <options sanitize="False" /> as used also in tools/fastq/fastq_manipulation.xml

Cheers, Jelle

On Tue, Oct 5, 2010 at 12:39 AM, Zhe Chen <zhe@lanl.gov> wrote:

...

Hi,

I was implementing a galaxy tool. A problem occurs when my input contains ">", linebreak, galaxy seems traslate them to __gt__, __cr____cn__. Is there a way to stop this translation?

Or suggestion to fix this problem?

Thanks _______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user

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