Re: [galaxy-user] running galaxy with SGE

Chris Cole wrote:

I'm getting the following error when trying to run galaxy over our cluster (using the unified method): Exception: SGEJobRunner requires DRMAA_python which was not found

I've got what I think is the right package from here: http://gridengine.sunsource.net/howto/drmaa_python.html

But I'm getting a bit out of my depth here and it's asking about 'swig'. Can I just check that I'm not doing anything stupid and that I can run this DRMAA_python in user-space rather than globally while I get to grips with the set-up?

Hi Chris,

You should be able to "scramble" DRMAA_python by setting SGE_ROOT and using our provided script:

SGE_ROOT=/path/to/sge python scripts/scramble.py DRMAA_python

Please let me know if this works for you.

--nate