Both should be quite easy. ememe will likely be easier since the
EMBOSS tools are completely command line configurable. Weeder is
slightly more difficult since it doesn't allow you to set the name of
the output files. A simple wrapper script can deal with that though.
On Sep 15, 2009, at 10:12 AM, Stephen Taylor wrote:
Would MEME be easier to integrate given that ememe is an EMBASSY
program and you already have EMBOSS in Galaxy?
> Not at the moment. However, if you know someone who has tried
> wrapping these for Galaxy, we can work with them to integrate these
> tools into our public instance.
> galaxy team
> On Sep 15, 2009, at 6:42 AM, Stephen Taylor wrote:
>> Are there any plans to incorporate the motif finders MEME
>> ) and/or Weeder (http://188.8.131.52/modtools/
) into Galaxy?
>> galaxy-user mailing list
> Anton Nekrutenko
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