Include a data folder into Galaxy
Hello, hopefully this is a simple question: How can I include a folder into the Galaxy server? The backgroud is, that I installed Galaxy on one of out server, which has access to the data folders used everywhere at our institute. So, instead of uploading and copying serveral big files (and waisting space on servers) I want to make a link to the appropiate folder, so it can be used like as the data has been uploaded. I hope I explained enough details... The question is: is it possible? Thanks for help, Norbert -- Institute of Bioinformatics Faculty of Medicine University of Muenster, Germany Use *BSD because Linux is a patch for Linux
Hi Norbert, please have a look at the FTP-Upload feature from galaxy. The idea is that every user gets an FTP folder in which he can upload data. If you create such a directory you can probably link your data in such directories and galaxy will offer them to the users in the upload tool. Hope that helps. Cheers, Bjoern
Hello,
hopefully this is a simple question: How can I include a folder into the Galaxy server?
The backgroud is, that I installed Galaxy on one of out server, which has access to the data folders used everywhere at our institute. So, instead of uploading and copying serveral big files (and waisting space on servers) I want to make a link to the appropiate folder, so it can be used like as the data has been uploaded. I hope I explained enough details... The question is: is it possible?
Thanks for help, Norbert
On Jun 25, 2012, at 2:49 AM, Björn Grüning wrote:
Hi Norbert,
please have a look at the FTP-Upload feature from galaxy. The idea is that every user gets an FTP folder in which he can upload data. If you create such a directory you can probably link your data in such directories and galaxy will offer them to the users in the upload tool.
In addition to FTP uploads for users, you may find the Data Library upload options useful: http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries/Uploading%20Library%20Files --nate
Hope that helps. Cheers, Bjoern
Hello,
hopefully this is a simple question: How can I include a folder into the Galaxy server?
The backgroud is, that I installed Galaxy on one of out server, which has access to the data folders used everywhere at our institute. So, instead of uploading and copying serveral big files (and waisting space on servers) I want to make a link to the appropiate folder, so it can be used like as the data has been uploaded. I hope I explained enough details... The question is: is it possible?
Thanks for help, Norbert
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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Hi, What I did was to create a directory with sub-directories for each user or data set. Then you can change the universe_wsgi_ini in line 375 and put your directory path there library_import_dir=your path Then as admin you can upload the files from the directory, actually you create a link to them and also change the accession permission to those files. Best, Luciano On Mon, Jun 25, 2012 at 1:49 AM, Björn Grüning < bjoern.gruening@pharmazie.uni-freiburg.de> wrote:
Hi Norbert,
please have a look at the FTP-Upload feature from galaxy. The idea is that every user gets an FTP folder in which he can upload data. If you create such a directory you can probably link your data in such directories and galaxy will offer them to the users in the upload tool.
Hope that helps. Cheers, Bjoern
Hello,
hopefully this is a simple question: How can I include a folder into the Galaxy server?
The backgroud is, that I installed Galaxy on one of out server, which has access to the data folders used everywhere at our institute. So, instead of uploading and copying serveral big files (and waisting space on servers) I want to make a link to the appropiate folder, so it can be used like as the data has been uploaded. I hope I explained enough details... The question is: is it possible?
Thanks for help, Norbert
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- *Luciano Cosme* --------------------------------------------- PhD Candidate Texas A&M Entomology Vector Biology Research Group www.lcosme.com 979 845 1885 cosme@tamu.edu ---------------------------------------------
participants (4)
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Björn Grüning -
Luciano Cosme -
Nate Coraor -
Norbert Grundmann