Hi Vasu,

I am running RNAseq in Galaxy after running Tophat I am trying to save Bam file but by default it is Bam Index file any suggestion how can I save Bam out of Tophat Thanks.

Clicking on the save icon (the disk) rather than the arrow will download the BAM file rather than the index. We've fixed this UI bug in our codebase so that clicking on the arrow will allow you to download either the BAM file or the index, and you'll see this fix when update our main server. Thanks, J.