Peera, Turning off bias correction can significantly shorten Cufflinks runtime. If you still encounter this error, you'll want to use a local or cloud instance of Galaxy: https://bitbucket.org/galaxy/galaxy-central/wiki/GetGalaxy http://wiki.g2.bx.psu.edu/Admin/Cloud Good luck, J. On Jan 30, 2012, at 3:40 AM, Hemarajata, Peera wrote:

Dear all,

My Cufflinks jobs keep getting killed due to the walltime limit. Is there a way to fix this or is there anything I can do to reduce the size of my BAM datasets so the analysis can get done?

Thank you!

Peera Hemarajata ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:

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