Dear all,
We had our first meeting for 2023 earlier.
It was nice to talk and get updates from people there! If you could not join, you can still share updates and requests in our rolling minutes https://docs.google.com/document/d/13VjcUjStuIp7bK29e74k8Nqb7N4lmVcg1ioArEWr254/edit?usp=sharing.
Few things we discussed and I want to raise to everyone.
TLDR (see details below): Before February 23th Review the draft https://docs.google.com/document/d/1SsUi5ZOxWbkCpnw1IYmDR0WpRK0csVMHzYhuME57-bc/edit?usp=sharing for the page on Galaxy Hub, comment, add anything missing (in particular projects, etc) Add your name and information if you want to participate in the Paper working group https://docs.google.com/document/d/1uVQ8E_8HpIuHDYHwR82jU8pCvj0tnebFKyS0juAoyGc/edit?usp=sharing Add your name and information if you want to participate in the Tool working group https://docs.google.com/document/d/14LJLyVgT29m63iovCww7nMDmfRAqOicedzxHu3aqXnE/edit?usp=sharing Let me know or add your information on the top of our rolling minutes https://docs.google.com/document/d/13VjcUjStuIp7bK29e74k8Nqb7N4lmVcg1ioArEWr254/edit?usp=sharing if you want to give a talk during our next meeting on April 13th, 3-5pm UTC
Page on the Galaxy Hub We would like to create a page on the Galaxy Hub (https://galaxyproject.org/) presenting the effort of the community. We started a draft https://docs.google.com/document/d/1SsUi5ZOxWbkCpnw1IYmDR0WpRK0csVMHzYhuME57-bc/edit?usp=sharing for such page with the idea is to collect available tools, workflows, and training but also use cases/applications, projects, publications, etc. I would like to publish it on the Hub in the next month. Please review the draft https://docs.google.com/document/d/1SsUi5ZOxWbkCpnw1IYmDR0WpRK0csVMHzYhuME57-bc/edit?usp=sharing, add anything missing (in particular projects, etc) before February 23th. This page could be later use as template for other community of practice
Paper(s?) Using this page as start, we also would to write paper(s?) https://docs.google.com/document/d/1uVQ8E_8HpIuHDYHwR82jU8pCvj0tnebFKyS0juAoyGc/edit?usp=sharinghttps://docs.google.com/document/d/1uVQ8E_8HpIuHDYHwR82jU8pCvj0tnebFKyS0juAoyGc/edit?usp=sharinghttps://docs.google.com/document/d/1uVQ8E_8HpIuHDYHwR82jU8pCvj0tnebFKyS0juAoyGc/edit?usp=sharinghttps://docs.google.com/document/d/1uVQ8E_8HpIuHDYHwR82jU8pCvj0tnebFKyS0juAoyGc/edit?usp=sharing to Advertise about microbial data analysis in Galaxy Know about more uses of Galaxy for microbial data analysis Aggregate information about resources and infrastructure available Have a project to work together on as a community To make that happening, we would like to start a working group that will meet regularly. If you are interested, add your name and information in this document https://docs.google.com/document/d/1uVQ8E_8HpIuHDYHwR82jU8pCvj0tnebFKyS0juAoyGc/edit?usp=sharing before February 23th. I will then contact interested people to organise a first meeting.
Curated list of tools For the paper, the page on the Hub, but also for general interest, we started a curated list of tools available in Galaxy for microbial data analysis https://docs.google.com/spreadsheets/d/1Nq_g-CPc8t_eC4M1NAS9XFJDflA7yE3b9hfSg3zu9L4/edit?usp=sharing. Available tools and their metadata are automatically extracted from different GitHub repositories using a script I wrote. We discussed today about starting a working group to continue the work on that. If you are interested in joining the effort, add your name and information in this document https://docs.google.com/document/d/14LJLyVgT29m63iovCww7nMDmfRAqOicedzxHu3aqXnE/edit?usp=sharing before February 23th.
Next meeting Our next meeting is planned for April 13th, 3-5pm UTC (see your timezone https://arewemeetingyet.com/UTC/2023-04-13/15:00/microGalaxy) If you would like to give a short talk, let me know or add your information on the top of our rolling minutes https://docs.google.com/document/d/13VjcUjStuIp7bK29e74k8Nqb7N4lmVcg1ioArEWr254/edit?usp=sharing.
Thanks for reading through this long email :)
Best,
On 7. Feb 2023, at 14:05, Bérénice Batut berenice.batut@gmail.com wrote:
Dear all,
A quick reminder that our next meeting will be on Thursday 8:00-10:00am UTC (check your timezone) • Meeting rolling minutes • Zoom (Meeting ID: 824 5310 1719; Passcode: micro) Daniela Brites from the Swiss Tropical and Public Health Institute will give a talk. See you on Thursday, Best, Bérénice
On 23. Jan 2023, at 10:33, Bérénice Batut berenice.batut@gmail.com wrote:
Dear all, I hope you are doing well! Here are some news about the microGalaxy community.
Next meeting - February 9th The next microGalaxy meeting will take place on February 9th 8:00-10:00am UTC (check your timezone) • Meeting rolling minutes • Zoom (Meeting ID: 824 5310 1719; Passcode: micro) Daniela Brites from the Swiss Tropical and Public Health Institute will give a talk.
Other news List of tools in Galaxy: A curated list of tools available in Galaxy and their metadata automatically extracted from different GitHub repositories using a dedicated script. In addition, we have a wishlist that is manually created. Page on the Hub about Microbial data analysis in Galaxy: We started a draft for a page on Hub to present the effort of the community regarding Microbial data analysis in Galaxy. The idea is to collect available tools, workflows, and training but also use cases/applications, projects, publications, etc. We would your help there. So please review/expand it.
I hope to see you during the next meeting. Best, Bérénice -- Bérénice Batut (she/her) Researcher University of Freiburg de.NBI / ELIXIR-DE https://research.bebatut.fr