Dear Bérénice,

Happy New Year! Hope you are well. Sorry for missing January meeting. I would be keen to hear what I missed and to see if I could join to the discussion regarding the papers and meetings follow ups.

Kind regards, Nela Dr Nedeljka Rosic Senior Lecturer in Biomedical Sciences & Deputy Chair of Health Faculty Board Faculty of Health T: 07 5589 3437tel:0000000000 M: 0401 173 990tel:0000000000 Southern Cross University Gold Coast Campus, Southern Cross Drive, Bilinga Qld www.scu.edu.auhttp://www.scu.edu.au/

CRICOS Provider: 01241G TEQSA Provider Code: PRV12043 Australian University Southern Cross University acknowledges and pays respect to the ancestors, Elders and descendants of the Lands upon which we meet and study. [Image] Teaching Studying Biomedical Science at Southern Cross University - YouTubehttps://www.youtube.com/watch?v=DApa0GpvQAU; My students Study Biomedical Science at Southern Cross University - YouTubehttps://www.youtube.com/watch?v=ibFIK12WMGc Research interest https://www.youtube.com/watch?v=WTLX9I7uH3U&feature=youtu.be Linkedin https://www.linkedin.com/in/nela-rosic-41459624/ TV interview https://www.facebook.com/9NewsGoldCoast/videos/277104717029882/ Editor Marine Drugs | Special Issue : Proteomic Studies for the Identification and Characterization of Marine Bioactive Molecules (mdpi.com)https://www.mdpi.com/journal/marinedrugs/special_issues/747IJQ0OF9 “This is the only chance you will ever have on Earth with this exciting adventure called life. So why not plan it, and try to live it as richly, as happily as possible?” ~ Dale Carnegie

From: Bérénice Batut berenice.batut@gmail.com Sent: Thursday, 19 October 2023 10:31 PM To: microgalaxy@lists.galaxyproject.org Subject: [microGalaxy] microGalaxy paper writing - Who is interested in contributing actively?

Hi all,

In the paper WG meeting yesterday, we discussed about the 2 papers we would like to write in the next months You can find below a quick description about the aims and timelines for both and more details in the paper WG noteshttps://docs.google.com/document/d/1uVQ8E_8HpIuHDYHwR82jU8pCvj0tnebFKyS0juAoyGc/edit?usp=sharing.

If you are interested in contributing actively in any or both papers, let us know either by answering this email or adding your name in the paper WG noteshttps://docs.google.com/document/d/1uVQ8E_8HpIuHDYHwR82jU8pCvj0tnebFKyS0juAoyGc/edit?usp=sharing on page 2 and 3 We will after that organise separate meetings for each paper.

Best,

Bérénice

User-oriented paper

What? (Opinion) paper showing that Galaxy is used for microbial data analysis and how with overview of publications using Galaxy, result of survey, use cases

Where? Open-access user oriented journal (e.g. BMC Microbiology)

When?

* November - December 2023

* Process the survey and use cases * Clarify the paper outline

* Beginning of 2024: write the manuscript

Technical paper

What? A technical paper presenting resources/infrastructure (tools, workflows, training, etc) available for microbial data analysis in Galaxy

Where? NAR webserverhttps://academic.oup.com/nar/pages/submission_webserver

When?

Deadlines for NAR webserver

* Submission of one-page summary by December, 20th * Submission of full manuscript 3 weeks after the date of the approval email or 31 January

Timeline

* November - December:

* Collect tools, workflows, database and training available in Galaxy * Write a 1st draft of the paper * Write the summary * Make a nice looking subdomain microgalaxy.usegalaxy.eu with links to workflows and training and selection of tools

* January

* Finalize the draft * Submit the manuscript