[November 21st] microGalaxy Meets IWC - A Hackathon for microbial data analysis workflow FAIRification
Hi all, Join us for a one-day hackathon focused on integrating, refining, and FAIRifying microbial data analysis Galaxy workflows within the Intergalactic Workflow Commission (IWC), enhancing their accessibility and reusability for the microbiology community. https://galaxyproject.org/events/2024-03-11-hackathon-galaxy-resources-annot... Objectives The primary goal of this hackathon is to prepare, integrate, and FAIRify microbial data analysis Galaxy workflows within the Intergalactic Workflow Commission (IWC), ensuring they adhere to best practices for accessibility, interoperability, and reusability across the bioinformatics community. IWC acts as a central hub for Galaxy workflows, automatically listing them in major registries like Dockstore and WorkflowHub, while ensuring workflows are rigorously reviewed, tested, and updated with every new Galaxy release. Versioning, tool updates, and essential metadata enhance the findability and usability of each workflow. In short, the objectives of this hackathon are to: Annotate and apply best practices to microbial data analysis Galaxy workflows for consistency and reusability Implement robust tests to ensure workflow reliability and accuracy Successfully integrate key microbial data analysis Galaxy workflows into IWC, improving accessibility and usability Collaborate as a community to refine and improve workflows, ensuring they are peer-reviewed and meet high standards Make these peer-reviewed workflows accessible to the broader community through the future microGalaxy Lab This hackathon is open to participants from all communities, so join us to help shape the future of bioinformatics workflows! General information Date: November 21th 2024 (one day) Location: Online a Zoom room, open the whole day 2 daily stand-ups to accommodate different time zones microGalaxy Matrix chat for communication Time: full day, 9/10 am CET to open end Cost: Free Preliminary Schedule The schedule is quite flexible. There is no requirement to join the whole week. See the event page for more details about the planned schedule (stand-ups, brainstorming meetings): https://galaxyproject.org/events/2024-03-11-hackathon-galaxy-resources-annot.... Participation To participate, add your name, your affiliation, your availability during the week, and your email in the "Participation" section of the organizational GDoc so we can include you in further communication: https://docs.google.com/document/d/1B125dSKhB6AevnyShSi_zXIXUQd49tvNYfWHuyqm... We hope to see a lot of you, even if it is just to say hi :) Best, Paul and Bérénice
Sorry, all the links in previous emails were wrong! Below is the correct one. --- Hi all, Join us for a one-day hackathon focused on integrating, refining, and FAIRifying microbial data analysis Galaxy workflows within the Intergalactic Workflow Commission (IWC), enhancing their accessibility, reusability for the microbiology community. https://galaxyproject.org/events/2024-11-21-hackathon-microgalaxy-iwc/ Objectives The primary goal of this hackathon is to prepare, integrate, and FAIRify microbial data analysis Galaxy workflows within the Intergalactic Workflow Commission (IWC), ensuring they adhere to best practices for accessibility, interoperability, and reusability across the bioinformatics community. IWC acts as a central hub for Galaxy workflows, automatically listing them in major registries like Dockstore and WorkflowHub, while ensuring workflows are rigorously reviewed, tested, and updated with every new Galaxy release. Versioning, tool updates, and essential metadata enhance the findability and usability of each workflow. In short, the objectives of this hackathon are to: Annotate and apply best practices to microbial data analysis Galaxy workflows for consistency and reusability Implement robust tests to ensure workflow reliability and accuracy Successfully integrate key microbial data analysis Galaxy workflows into IWC, improving accessibility and usability Collaborate as a community to refine and improve workflows, ensuring they are peer-reviewed and meet high standards Make these peer-reviewed workflows accessible to the broader community through the future microGalaxy Lab This hackathon is open to participants from all communities, so join us to help shape the future of bioinformatics workflows! General information Date: November 21th 2024 (one day) Location: Online a Zoom room, open the whole day 2 daily stand-ups to accommodate different time zones microGalaxy Matrix chat for communication Time: full day, 9/10 am CET to open end Cost: Free Preliminary Schedule The schedule is quite flexible. There is no requirement to join the whole week. See the event page for more details about the planned schedule (stand-ups, brainstorming meetings): https://galaxyproject.org/events/2024-11-21-hackathon-microgalaxy-iwc/ Participation To participate, add your name, your affiliation, your availability during the week, and your email in the "Participation" section of the organizational GDoc so we can include you in further communication: https://docs.google.com/document/d/1tXy3lMYDqpq6A08MLS52U7t9f41V1ByE4jAb6Ss8... We hope to see a lot of you, even if it is just to say hi :) Best, Paul and Bérénice
On 14 Oct 2024, at 12:25, Bérénice Batut <berenice.batut@gmail.com> wrote:
Hi all,
Join us for a one-day hackathon focused on integrating, refining, and FAIRifying microbial data analysis Galaxy workflows within the Intergalactic Workflow Commission (IWC), enhancing their accessibility and reusability for the microbiology community.
https://galaxyproject.org/events/2024-03-11-hackathon-galaxy-resources-annot...
Objectives
The primary goal of this hackathon is to prepare, integrate, and FAIRify microbial data analysis Galaxy workflows within the Intergalactic Workflow Commission (IWC), ensuring they adhere to best practices for accessibility, interoperability, and reusability across the bioinformatics community. IWC acts as a central hub for Galaxy workflows, automatically listing them in major registries like Dockstore and WorkflowHub, while ensuring workflows are rigorously reviewed, tested, and updated with every new Galaxy release. Versioning, tool updates, and essential metadata enhance the findability and usability of each workflow.
In short, the objectives of this hackathon are to:
Annotate and apply best practices to microbial data analysis Galaxy workflows for consistency and reusability Implement robust tests to ensure workflow reliability and accuracy Successfully integrate key microbial data analysis Galaxy workflows into IWC, improving accessibility and usability Collaborate as a community to refine and improve workflows, ensuring they are peer-reviewed and meet high standards Make these peer-reviewed workflows accessible to the broader community through the future microGalaxy Lab
This hackathon is open to participants from all communities, so join us to help shape the future of bioinformatics workflows!
General information
Date: November 21th 2024 (one day) Location: Online a Zoom room, open the whole day 2 daily stand-ups to accommodate different time zones microGalaxy Matrix chat for communication Time: full day, 9/10 am CET to open end Cost: Free
Preliminary Schedule
The schedule is quite flexible. There is no requirement to join the whole week.
See the event page for more details about the planned schedule (stand-ups, brainstorming meetings): https://galaxyproject.org/events/2024-03-11-hackathon-galaxy-resources-annot....
Participation
To participate, add your name, your affiliation, your availability during the week, and your email in the "Participation" section of the organizational GDoc so we can include you in further communication: https://docs.google.com/document/d/1B125dSKhB6AevnyShSi_zXIXUQd49tvNYfWHuyqm...
We hope to see a lot of you, even if it is just to say hi :)
Best,
Paul and Bérénice
The main goal of this hackathon is to prepare, combine, and FAIRify Galaxy workflows for microbial data analysis within the Intergalactic Workflow Commission (IWC). This will make sure that they follow best practices for accessibility, interoperability, and reusability in the bioinformatics community. IWC is the hub for Galaxy workflows. It makes sure that workflows are carefully reviewed, tested, and updated with each new Galaxy release and automatically adds them to important registries like Dockstore and WorkflowHub. Each workflow is easier to find and use thanks to versioning, tool updates, and important information. https://io-games.onl/
Alert !! It seems some kind of spammer joined our mailing list, actually writing with legid content - probably chatgpt generated but with spam links to some strange gaming sites: please ignore anything from: kanetracy1208@gmail.com <kanetracy1208@gmail.com> schrieb am Mi., 16. Okt. 2024, 4:05 AM:
The main goal of this hackathon is to prepare, combine, and FAIRify Galaxy workflows for microbial data analysis within the Intergalactic Workflow Commission (IWC). This will make sure that they follow best practices for accessibility, interoperability, and reusability in the bioinformatics community. IWC is the hub for Galaxy workflows. It makes sure that workflows are carefully reviewed, tested, and updated with each new Galaxy release and automatically adds them to important registries like Dockstore and WorkflowHub. Each workflow is easier to find and use thanks to versioning, tool updates, and important information. https://io-games.onl/ _______________________________________________ microGalaxy mailing list -- microgalaxy@lists.galaxyproject.org To unsubscribe send an email to microgalaxy-leave@lists.galaxyproject.org
Hi Paul and everyone else! I had some trouble running *all* of the tutorials in the micro group included during the academy training this month here. I tested the first three, then gave up. https://training.galaxyproject.org/training-material/events/tracks/gta2024-b... Missing tools, indexes, the workflow had problems, something for each of them at the UseGalaxy.org server. Maybe that is known? Be great to get those resolved, please let me know if I can help with the tool or data requests, or anything else. Thanks and *so great* to see this all getting out to the IWC!!! -- Jennifer Hillman-Jackson Galaxy Support Coordinator https://galaxyproject.org On Tue, Oct 15, 2024 at 10:44 PM Paul Zierep < zierep@informatik.uni-freiburg.de> wrote:
Alert !! It seems some kind of spammer joined our mailing list, actually writing with legid content - probably chatgpt generated but with spam links to some strange gaming sites: please ignore anything from: kanetracy1208@gmail.com
<kanetracy1208@gmail.com> schrieb am Mi., 16. Okt. 2024, 4:05 AM:
The main goal of this hackathon is to prepare, combine, and FAIRify Galaxy workflows for microbial data analysis within the Intergalactic Workflow Commission (IWC). This will make sure that they follow best practices for accessibility, interoperability, and reusability in the bioinformatics community. IWC is the hub for Galaxy workflows. It makes sure that workflows are carefully reviewed, tested, and updated with each new Galaxy release and automatically adds them to important registries like Dockstore and WorkflowHub. Each workflow is easier to find and use thanks to versioning, tool updates, and important information. https://io-games.onl/ _______________________________________________ microGalaxy mailing list -- microgalaxy@lists.galaxyproject.org To unsubscribe send an email to microgalaxy-leave@lists.galaxyproject.org
_______________________________________________ microGalaxy mailing list -- microgalaxy@lists.galaxyproject.org To unsubscribe send an email to microgalaxy-leave@lists.galaxyproject.org
participants (4)
-
Bérénice Batut -
Jennifer Hillman-Jackson -
kanetracy1208＠gmail.com -
Paul Zierep