- Esg-wp2 - lists.galaxyproject.org

WorkflowHub knowledge graph meeting
by Stian Soiland-Reyes 16 May '24

16 May '24

Volodymyr, Denys, Paul, Manchester-folks. Thanks for voting in the calendly for the meeting on building WorkflowHub knowledge graph. The meeting will be: When: Fri 2025-05-03 13:00 BST / 14:00 CEST Where: https://zoom.us/j/96948642698 What: https://docs.google.com/document/d/1N633jnCuS63Gh78L2Vtd-SBjCb29GPCmJZF01pY… Apologies to Nick for the time - I thought we better start one week early, and then we catch up. I'll send a calendar invite as well to those that responded, but feel WP2 folks are free to join. In this meeting we'll try to split the work on how we can build a knowledge graph for WorkflowHub from its RO-Crate and associated resources, and ponder a bit about architectural choices, e.g. Neo4J vs Jena, workflow vs Python. EuroScienceGateway folks, welcome Alexander and Oliver who has just joined eScience Lab to work on RO-Crate. -- Stian Soiland-Reyes, The University of Manchester https://www.esciencelab.org.uk/ https://orcid.org/0000-0001-9842-9718 Please note that I may work flexibly - whilst it suits me to email now, I do not expect a response or action outside of your own working hours.

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EuroScienceGateway WP2 call #17
by Stian Soiland-Reyes 24 Apr '24

24 Apr '24

This is a friendly reminder that tomorrow (Thursday) is our regular EuroScienceGateway WP2 meeting: What: https://docs.google.com/document/d/1Z0J9pmrJ6icxmE7J9asXtEyuG30pR4QeEMO0a5E… When: 2024-04-25 09:00 BST / 10:00 CEST Where: https://zoom.us/j/96364046780 Hope to see you there! -- Stian Soiland-Reyes, The University of Manchester https://www.esciencelab.org.uk/ https://orcid.org/0000-0001-9842-9718 Please note that I may work flexibly - whilst it suits me to email now, I do not expect a response or action outside of your own working hours.

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WorkflowHub publisher and Journal forum
by Stian Soiland-Reyes 17 Apr '24

17 Apr '24

Volodymyr and other interested ESG folks, Carole is starting the WorkflowHub Publishers and Journal Forum on 9th May 2024 and have invited some friends & family in the journalsphere for the inaugural meeting: - Anita De Waard (Elsevier) - Scott Edmunds (GigaScience) - Iain Hrynaszkiewicz (PLoS, Director, Open Research Solutions) - Matt Cannon (Taylor & Francis, Head of Open Research), Do you have other contacts with publishers we could invite, who may be interested in FAIR workflow publishing? It may make sense that we start small and then grow the "club" as the vision materialises, so perhaps check with Carole before sharing the agenda for the first meeting. Volodymyr, you mentioned someone at Episciences? I think we can invite them right away if the time works. See agenda for 9th May: https://docs.google.com/document/d/1EdntONueCgk5AYPKYJZUlCSVm4TFjEXXrcRvsNI… BTW, BMJ has also just made data and code sharing mandatory: https://doi.org/10.1136/bmj.q324 -- Stian Soiland-Reyes, The University of Manchester https://www.esciencelab.org.uk/ https://orcid.org/0000-0001-9842-9718 Please note that I may work flexibly - whilst it suits me to email now, I do not expect a response or action outside of your own working hours.

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EuroScienceGateway WP2 meeting #16
by Stian Soiland-Reyes 03 Apr '24

03 Apr '24

Good morning, This is a reminder that today we have the regular WP2 call. Many of you may be on Easter break already (most Norwegian seem to have fled the cities already last weekend) so it may be a short call! Where: https://zoom.us/j/96364046780 When: Thu 2024-03-28 09:00 GMT / 10:00 CET What: https://docs.google.com/document/d/1Z0J9pmrJ6icxmE7J9asXtEyuG30pR4QeEMO0a5E… We'll discuss the upcoming deadlines for May, including milestone on "Knowledge graph from WorkflowHub" -- Stian Soiland-Reyes, The University of Manchester https://www.esciencelab.org.uk/ https://orcid.org/0000-0001-9842-9718 Please note that I may work flexibly - whilst it suits me to email now, I do not expect a response or action outside of your own working hours.

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by emily green 26 Mar '24

26 Mar '24

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EuroScienceGateway WP2 #15
by Stian Soiland-Reyes 29 Feb '24

29 Feb '24

Good morning, This is a belated reminder that in a bit we have the regular WP2 call. When: 2024-02-29 09:00 GMT / 10:00 CET (55 minutes) Where: https://zoom.us/j/96364046780 Our main topic is milestone 3, "Initial EuroScienceGateway workflows registered" Hope to see you there! -- Stian Soiland-Reyes, The University of Manchester https://www.esciencelab.org.uk/ https://orcid.org/0000-0001-9842-9718 Please note that I may work flexibly - whilst it suits me to email now, I do not expect a response or action outside of your own working hours.

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MS3 Registering EuroScienceGateway workflows -- add yours!
by Stian Soiland-Reyes 28 Feb '24

28 Feb '24

Hi, I've drafted a Milestone document for MS3: "Initial EuroScienceGateway workflows registered" https://docs.google.com/document/d/1wwfUSBCW-YSFWLfZMvFz5XT6aRfIN1XO/edit#h… As discussed in exec meeting today, the idea is to transform this to a ESG blog post and we link to it from the EU tickbox (due end Feb), but I'll probably also put a PDF in Zenodo as it has a Milestone type. So this is a request to the consortium for approval of MS3 -- please leave any comments in the above Google Doc by tomorrow (!). Also, this is your chance to add your workflows to the WorkflowHub collection of EuroScienceGateway. This does not have to be completed by tomorrow as the collection is dynamic, however I have a small table as a snapshot inside the milestone document. The project-specific guide for ESG use of WorkflowHub is in https://doi.org/10.48546/workflowhub.sop.8.2 -- please have a look for how to register in WorkflowHub and add your workflow. I've also linked to this from the MS. As indicated in the MS document, you may also associate an existing workflow entry to the ESG collection -- this may be the case for any of the IWC workflows https://workflowhub.eu/projects/33 -- but you may need to contact myself on Matrix or email to link them, e.g. if the WorkflowHub Bot has not affiliated said workflow with your account. -- Stian Soiland-Reyes, The University of Manchester https://www.esciencelab.org.uk/ https://orcid.org/0000-0001-9842-9718 Please note that I may work flexibly - whilst it suits me to email now, I do not expect a response or action outside of your own working hours.

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by fa318991＠gmail.com 16 Feb '24

16 Feb '24

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EuroScienceGateway WP2 meeting #14
by Stian Soiland-Reyes 24 Jan '24

24 Jan '24

Good morning, This is a reminder that today is our regular EuroScienceGateway WP2 meeting. When: 2024-01-25 09:00 GMT / 10:00 CET Where: https://zoom.us/j/96364046780 What: https://docs.google.com/document/d/1Z0J9pmrJ6icxmE7J9asXtEyuG30pR4QeEMO0a5E… Hope to see you there! -- Stian Soiland-Reyes, The University of Manchester https://www.esciencelab.org.uk/ https://orcid.org/0000-0001-9842-9718 Please note that I may work flexibly - whilst it suits me to email now, I do not expect a response or action outside of your own working hours.

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Canceled: EuroScienceGateway WP2
by Stian Soiland-Reyes 30 Nov '23

30 Nov '23

Skip WP2 meeting in July 2025 due to holidays

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