Hi Nate, I'm glad to hear this issue has been addressed. However, when I try
megablast_wrapper = sge:///galaxy.q/-pe threads 8/
I get the following error:
An error occurred running this job:failure running job 1557: Space (' ') not allowed in objectname
Thanks, Ed
On Mar 8, 2010, at 9:25 AM, Nate Coraor wrote:
Edward Kirton wrote:
Hello, Is there a way to pass SGE options to the runner? Specifically, i'd like to tell the scheduler the number of cores required by a tool (-pe).
Hi Ed,
Support for this was recently introduced. It follows the format explained under "The job runner URL" here:
http://bitbucket.org/galaxy/galaxy-central/wiki/Config/Cluster
--nate
Thanks, Ed Kirton US DOE JGI
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