Hi List,
I'm trying to write a test for Galaxy and it fails on the result of the test differing from the expected output. As the output of diff (below) lists nothing but local_file data, I'm assuming that the issue is that no output is being generated by the test. The test config is a series of passed values, with the exception of one parameter, which is actually an entry pulled from a loc file directing my tool to the location of the file on disk (i.e. it's a identifier value). I'm not really sure what's happening, but I'd appreciate any help or pointers.
Thanks, Kipper
--- local_file +++ history_data @@ -1,100 +1,100 @@ -chr10 4522044 4522438 -chr10 5650896 5651310 -chr10 5772258 5772663 -chr10 9135867 9136467 -chr10 9946900 9947273 -chr10 10793689 10794313 -chr10 15790023 15790478 -chr10 16048435 16049028 -chr10 17620155 17620367 -chr10 21718404 21719020 -chr10 22967169 22967533 -chr10 22999383 22999802 -chr10 24511845 24512748 -chr10 24773636 24774006 -chr10 25975943 25976389 -chr10 26620032 26620396 -chr10 26907992 26908408 -chr10 28309833 28310034 -chr10 30908407 30909220 -chr10 31184776 31185151 -chr10 31191717 31192170 -chr10 31651098 31651551 -chr10 32422502 32422880 -chr10 33316453 33316817 -chr10 34353700 34354168 -chr10 34570612 34571026 -chr10 34853178 34853542 -chr10 34857471 34857818 -chr10 34994111 34994269 -chr10 38557788 38558691 -chr10 43296854 43297454 -chr10 44159102 44159480 -chr10 45208753 45209123 -chr10 45246414 45246794 -chr10 46861707 46862080 -chr10 47021051 47021457 -chr10 47716908 47717259