Is this a fresh clone from galaxy-dist or have you pulled it from somewhere else? It looks like your galaxy clone's lib/galaxy/datatypes/registry.py has been altered to have an extra import, 'gmap', for gmap tools.
-Dannon
On Wed, Mar 6, 2013 at 12:08 PM, David Hoover hooverdm@helix.nih.govwrote:
Hi,
I'm trying to load an instance of Galaxy from scratch, and I'm getting this error message after configuration and typing "./run.sh":
Traceback (most recent call last): File "./scripts/paster.py", line 33, in <module> serve.run() File "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**serve.py", line 1056, in run invoke(command, command_name, options, args[1:]) File "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**serve.py", line 1062, in invoke exit_code = runner.run(args) File "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**serve.py", line 227, in run result = self.command() File "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**serve.py", line 650, in command app = loadapp( app_spec, name=app_name, relative_to=base, global_conf=vars) File "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**loadwsgi.py", line 350, in loadapp return loadobj(APP, uri, name=name, **kw) File "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**loadwsgi.py", line 374, in loadobj global_conf=global_conf) File "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**loadwsgi.py", line 399, in loadcontext global_conf=global_conf) File "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**loadwsgi.py", line 423, in _loadconfig return loader.get_context(object_**type, name, global_conf) File "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**loadwsgi.py", line 561, in get_context section) File "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**loadwsgi.py", line 620, in _context_from_explicit value = import_string(found_expr) File "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**loadwsgi.py", line 125, in import_string return pkg_resources.EntryPoint.**parse("x=" + s).load(False) File "/spin1/users/galaxy/galaxy1/**lib/pkg_resources.py", line 1954, in load entry = __import__(self.module_name, globals(),globals(), ['__name__']) File "/spin1/users/galaxy/galaxy1/**lib/galaxy/web/buildapp.py", line 3, in <module> from galaxy.webapps.galaxy.buildapp import app_factory File "/spin1/users/galaxy/galaxy1/**lib/galaxy/webapps/galaxy/**buildapp.py", line 18, in <module> from galaxy import config, jobs, util, tools File "/spin1/users/galaxy/galaxy1/**lib/galaxy/jobs/__init__.py", line 15, in <module> from galaxy import util, model File "/spin1/users/galaxy/galaxy1/**lib/galaxy/model/__init__.py", line 13, in <module> import galaxy.datatypes.registry File "/spin1/users/galaxy/galaxy1/**lib/galaxy/datatypes/registry.**py", line 9, in <module> import gmap # added for gmap tools ImportError: No module named gmap
What is missing?
David Hoover Helix Systems Staff ______________________________**_____________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: