It's actually in related to a new galaxy shed tool we developed called meme-chip, we uploaded it to the main Tool Shed site.
We provided tool_data_table_conf.xml.sample and xxx.loc.sample along with the tool. After the installation, the loc file has been populated automatically, but the entry inside tool_data_table_conf.xml.sample didn't get populated.
Although it can be fixed easily by adding entries to the runtime tool_data_table_conf.xml manually, it's good to know if it's the right way or we are missing something in the shed tool repos.
On Thu, Nov 8, 2012 at 10:20 AM, Derrick Lin email@example.com wrote:
After installing the BWA from the Tools Shed, I find there is a new tool_data_table_conf.xml got created under tool-data directory. The file contains the entries of BWA's loc files.
I believe the installed BWA still relies on the tool_data_table_conf.xml under galaxy root dir. Anyone can clarify what the one under tool-data dir is for?