Thanks for your response. I figured out it was some extra text at the end of the xml file that was preventing galaxy from reading the file. I also was confused about how to setup the proxy. For Ubuntu, the apache2 configuration file is in /etc/apache2/sites-available/default (using virtual servers by default) I was initially working with /etc/apache2/httpd.conf which I think may be the standard in other distros. Jeremy On Thu, Nov 3, 2011 at 7:23 PM, Jennifer Jackson <jen@bx.psu.edu> wrote:
Hello Jeremy,
Galaxy does not come with a display tool for UCSC. There is an integrated display tool, under Visualization, commonly called "Trackster". The icon for Trackster is a set of colored, stacked bars that when hovered over is labeled "Visualize in Trackster".
If you do want to display at the public (or a local mirror) UCSC browser, then some additional set-up is required. Here are the links to the details, including a tutorial:
http://wiki.g2.bx.psu.edu/**Admin/Config/Apache%20Proxy<http://wiki.g2.bx.psu.edu/Admin/Config/Apache%20Proxy>(scroll to Display at UCSC)
http://wiki.g2.bx.psu.edu/**Admin/Tools/External%** 20Display%20Applications%**20Tutorial<http://wiki.g2.bx.psu.edu/Admin/Tools/External%20Display%20Applications%20Tutorial>
http://wiki.g2.bx.psu.edu/**Admin <http://wiki.g2.bx.psu.edu/Admin>
Hopefully this helps to get you started,
Jen Galaxy team
On 11/2/11 3:52 PM, Jeremy Villalobos wrote:
Hello:
The display tool for UCSC that comes with the local installation package does not work. uploading a bigbed file (from the test-data that comes with the package) does not trigger the webapp to show an option to view the file using UCSC's viewer.
How do I enable this ?
To reproduce the issue, simply download galaxy using mercurial. change the host address to 0.0.0.0. and load the bigbed file from the test-data directory. Once the file uploads, the user should expect to see a display tool added to the files description (on the right), but nothing is shown.
Thanks
Jeremy UNCC
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