Problem fixed.
I should do
<command interpreter="perl">rpc_client.pl -u http://hiv-dev.lanl.gov:8081/tools/rpc -m formatconverter.convertFormat "sequencesText" "$sequence"</command>
instead of
<command interpreter="perl">perl rpc_client.pl -u http://hiv-dev.lanl.gov:8081/tools/rpc -m formatconverter.convertFormat "sequencesText" "$sequence"</command>
Sorry for bothering.
Hi,
When I put the following in my tool xml <command>perl rpc_client.pl -u http://hiv-dev.lanl.gov:8081/tools/rpc -m formatconverter.convertFormat "sequencesText" "$sequence"</command>
And run the tool, it only execute " perl rpc_client.pl "sequencesText" "$sequence" ". Those options " -u http://hiv-dev.lanl.gov:8081/tools/rpc -m formatconverter.convertFormat " are ignored. How to fix this problem?
Thanks