hi all:
galaxy.jobs.runners.cli_job.torque WARNING 2014-03-07 11:23:33,764 No valid qstat XML return from `qstat -x`, got the following: galaxy.jobs.runners ERROR 2014-03-07 11:23:33,765 Unhandled exception checking active jobs Traceback (most recent call last): File "/share/home/ldapuser/main/lib/galaxy/jobs/runners/__init__.py", line 339, in monitor self.check_watched_items() File "/share/home/ldapuser/main/lib/galaxy/jobs/runners/cli.py", line 150, in check_watched_items job_states = self.__get_job_states() File "/share/home/ldapuser/main/lib/galaxy/jobs/runners/cli.py", line 202, in __get_job_states job_states.update(job_interface.parse_status(cmd_out.stdout, job_ids)) TypeError: 'NoneType' object is not iterable
#qmgr -c "p q batch"
create queue batch set queue batch queue_type = Execution set queue batch enabled = True set queue batch started = True
Finish the torque tasks ， throw exceptions in the log file。
ngsflow@hygenomics.com