What I ended up doing was downgrading MySQL to 5.6 in the affected environments.
On Tue, Feb 20, 2018 at 4:51 AM, Jochen Bick jochen.bick@usys.ethz.ch wrote:
Thanks, nate,
can you tell me one I can update? And what i need to update?
Cheers Jochen
On 15.02.2018 16:24, Nate Coraor wrote:
Hi Jochen,
I ran in to this yesterday, we're working on fixing it right now. It's
due
to this:
https://github.com/bioconda/bioconda-recipes/issues/5430
And because Galaxy's converters use the `ucsc_tools` IUC conda
metapackage,
which still points to the old versions. I have an update here:
https://github.com/galaxyproject/conda-iuc/pull/14
Once that is available you should be able to `conda update ucsc_tools`
the
affected environments. I am also working on switching all of the requirements so they depend on the individual ucsc-* packages from
Bioconda
instead of the metapackage so we shouldn't need to maintain it in the future.
--nate
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