Hi ,
I am trying to get a dependency to work in practice (when running a tool after the installation). But I keep getting the following message when running the tool:
[sshexec] galaxy.tools.deps DEBUG 2014-10-24 16:04:15,514 Building dependency shell command for dependency 'R_bioc_metams' [sshexec] galaxy.tools.deps WARNING 2014-10-24 16:04:15,514 Failed to resolve dependency on 'R_bioc_metams', ignoring
This is the tool requirements section:
<requirements> <requirement type="package" version="3.1.1">R_bioc_metams</requirement> </requirements>
This is the repository_dependencies.xml :
<repositories description="Required metaMS dependencies."> <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="prims_metabolomics_dependencies" owner="pieterlukasse" changeset_revision="71356c62e5cd" /> </repositories>
This is the package name of the package that is being referred:
<tool_dependency> <package name="R_bioc_metams" version="3.1.1"> <install version="1.0"> <actions_group> ....
I can't find the problem. Any ideas? I have updated to the latest Galaxy version (today) and removed both items (with option to remove files) and installed them again. Am I facing a bug here?
Thanks,
Pieter Lukasse Wageningen UR, Plant Research International Department of Bioinformatics (Bioscience) Wageningen Campus, Building 107, Droevendaalsesteeg 1, 6708 PB, Wageningen, the Netherlands T: +31-317481122; M: +31-628189540; skype: pieter.lukasse.wur http://www.pri.wur.nlhttp://www.pri.wur.nl/