Hello Mahtab,
Your best option for getting an answer to this would probably be to contact the repository owner, as they are the most familiar with the behavior of their tools. You can contact the owner using the repository options menu for the repository.
Greg Von Kuster
On Feb 28, 2013, at 11:52 PM, Mahtab Mirmomeni wrote:
Still waiting on a reply! Any suggestion is appreciated.
On Tue, Feb 26, 2013 at 1:55 PM, Mahtab Mirmomeni m.mirmomeni@student.unimelb.edu.au wrote: Hi all,
I have installed Deseq (by vipints) from the main galaxy toolshed and have followed the make instructions but I'm still not unable to run it inside Galaxy and I get the following error.
(Path is the path to our local galaxy instance) error: get_read_counts: Path/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/deseq_hts/2b3bb3348076/deseq_hts/deseq-hts_1.0/mex/get_reads.mex: failed to load: /mnt/all/cloudman/galaxy/clare/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/deseq_hts/2b3bb3348076/deseq_hts/deseq-hts_1.0/mex/get_reads.mex: undefined symbol: bam_index_destroy error: called from: error: Path/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/deseq_hts/2b3bb3348076/deseq_hts/deseq-hts_1.0/src/get_read_counts.m at line 97, column 34 starting Octave failed
I should add that I can run octave from command line and it seems to be working.
Any suggestions is much appreciated.
Thanks
Mahtab
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