Sigh. FTP is state of the art?
At least we got a plug. Some more wouldn't do any harm...
2010/10/7 Michael Cho mikecho95@gmail.com
Thought you would find this conversation amusing.
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Date: Thu, Oct 7, 2010 at 4:52 PM Subject: Digest for solexa@googlegroups.com - 9 Messages in 1 Topic To: Digest Recipients <solexa+digest@googlegroups.comsolexa%2Bdigest@googlegroups.com
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Data delivery for HiSeq [9 Updates]
Topic: Data delivery for HiSeq
Sivakumar Gowrisankar siva80@gmail.com Oct 07 10:04AM -0400 ^
Hi,
For those of you who are in a core lab, would you please share how you deliver data to your customers? I am especially interested in the HiSeq data.
Thank you Siva
Davide Cittaro daweonline@gmail.com Oct 07 04:06PM +0200 ^
On Oct 7, 2010, at 4:04 PM, Sivakumar Gowrisankar wrote:
Hi,
For those of you who are in a core lab, would you please share how you
deliver data to your customers? I am especially interested in the HiSeq data.
We are testing galaxy (http://usegalaxy.org) for that.
d
-- Davide Cittaro daweonline@gmail.com http://daweonline.googlepages.com/
"Kittler, Ellen Ph. D." Ellen.Kittler@umassmed.edu Oct 07 10:26AM -0400 ^
I'm ordering a blue ray disk burner for off campus users ! On-campus users have a pick up area at nearline storage on the high performance cluster.
Ellie
-----Original Message----- From: solexa@googlegroups.com [mailto:solexa@googlegroups.com] On Behalf Of Davide Cittaro Sent: Thursday, October 07, 2010 10:07 AM To: solexa@googlegroups.com Subject: Re: Data delivery for HiSeq
On Oct 7, 2010, at 4:04 PM, Sivakumar Gowrisankar wrote:
Hi,
For those of you who are in a core lab, would you please share how you
deliver data to your customers? I am especially interested in the HiSeq data.
We are testing galaxy (http://usegalaxy.org) for that.
d
-- Davide Cittaro daweonline@gmail.com http://daweonline.googlepages.com/
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Terry Camerlengo terry.camerlengo@gmail.com Oct 07 10:32AM -0400 ^
Depending on specifics....website and/or FTP server.
Chulhong Kim cybog337@gmail.com Oct 07 11:11PM +0900 ^
Dear Siva In our case we deliver the seq data to customer using Hdd. If you use the FTP then it spend too much time. Brst regards. Chul Kim
- 오후 11:04에 "Sivakumar Gowrisankar" siva80@gmail.com님이 작성:
Hi,
For those of you who are in a core lab, would you please share how you deliver data to your customers? I am especially interested in the HiSeq data.
Thank you Siva
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aubin thomas aubinthomas@gmail.com Oct 07 04:37PM +0200 ^
Hi,
it depends on the type of the files that you want to share. A FTP with secure connection is suitable if you share only the reads that pass the filter
On Thu, Oct 7, 2010 at 16:32, Terry Camerlengo
Ammar Husami ammar.husami@gmail.com Oct 07 03:16PM -0400 ^
We use a secure file sharing tool that is only available to cchmc faculty and staff, and we purchased 20GB of space for $50/year. http://bmixythos .cchmc.org but we can use it to send data inside and outside the organization.
Ammar Husami Applications Specialist Molecular Diagnostics Laboratory Department of Human Genetics Cincinnati Children's Hospital Medical Center
On Thu, Oct 7, 2010 at 10:32 AM, Terry Camerlengo <
Terry Camerlengo terry.camerlengo@gmail.com Oct 07 03:50PM -0400 ^
Why would you say FTP takes too much time? A typical export file compressed is around 7-8 GB per lane. On a network connection around 15 Mbs (the average rates at our institution) you are looking at a download time of 7-10 minutes per lane.
Not fast by any means, but considering the size of the files, it certainly beats burning things to DVDs and mailing it.
2010/10/7 Chulhong Kim cybog337@gmail.com
Andrew Gagne agagne@gmail.com Oct 07 04:08PM -0400 ^
We generally distribute data via ftp, although some of our users request their entire run folder and we transfer that on our internal shared storage system.
andrew
2010/10/7 Terry Camerlengo terry.camerlengo@gmail.com
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