Looks to me like tmpfs is full and maybe too small. http://wiki.galaxyproject.org/Admin/Config/Performance/Cluster?highlight=%28... suggests setting $TEMP= somewhere sensible. But that's not always enough depending on the third party executables you're running so you might want a bigger /tmpfs too.
On Wed, Dec 19, 2012 at 6:52 PM, 泽 蔡 caizexi123@yahoo.com.cn wrote:
Hi Ross,
Filesystem 1K-blocks Used Available Use% Mounted on /dev/sda1 90717816 89796388 0 100% / tmpfs 66070064 372 66069692 1% /dev/shm /dev/sdb1 1968618280 199800 1868418484 1% /copy /dev/sdb2 7336174008 3759366732 3204151100 54% /home
Then how shall I do?
Best regard!
*发件人：* Ross ross.lazarus@gmail.com *收件人：* 泽 蔡 caizexi123@yahoo.com.cn *发送日期：* 2012年12月19日, 星期三, 2:30 下午 *主题:* Re: [galaxy-dev] IOError: [Errno 28] No space left on device
Possibly not enough space left on the volume being used for temporary files.
What does df show?
On Wed, Dec 19, 2012 at 4:42 PM, 泽 蔡 caizexi123@yahoo.com.cn wrote:
Hi all,
When I added a dataset in the Manage data libraries, galaxy reported some erros. Anyone knows what's wrong?
Miscellaneous information: Traceback (most recent call last): File "/home/caizexi/usr/galaxy/tools/data_source/upload.py", line 384, in __main__() File "/home/caizexi/usr/galaxy/tools/data_source/upload.py", line 373, in __main__ add_file( dataset, registry, js Job Standard Error Traceback (most recent call last): File "/home/caizexi/usr/galaxy/tools/data_source/upload.py", line 384, in __main__() File "/home/caizexi/usr/galaxy/tools/data_source/upload.py", line 373, in __main__ add_file( dataset, registry, json_file, output_path ) File "/home/caizexi/usr/galaxy/tools/data_source/upload.py", line 270, in add_file line_count, converted_path = sniff.convert_newlines( dataset.path, in_place=in_place ) File "/home/caizexi/usr/galaxy/lib/galaxy/datatypes/sniff.py", line 99, in convert_newlines fp.write( "%s\n" % line.rstrip( "\r\n" ) ) IOError: [Errno 28] No space left on device error Database/Build: ? Number of data lines: None
Best regards